SNP Profiles of UF 613   View Data

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 Key

 1234567891011121314
_Input profile
CTCCCTCCGGTTATCCCTAAGGAGCTAA
1._RUQ_1573
_______CC___AG__
2._UF_613
_______CC___AG__
3._RUQ_1573
_______CC___AG__
4._UF_613
_______CC___AG__
5._UF_613
_______CC___AG__
6._UF_613
_______CC___AG__
7._UF_613
_______CC___AG__
8._UF_613
_______CC___AG__
9._UF_613
_______CC___AG__
10._UF_613
_______CC___AG__
11._UF_613
_______CC___AG__
12._UF_613
_______CC___AG__
13._UF_613
_______CC___AG__
14._UF_613
_______CC___AG__
15._UF_613
_______CC___AG__
16._UF_613
_______CC___AG__
17._GC-08-046-1-57
_______CC___AG__
18._GC-05-057-2-08
_______CC___AG__
19._GC-05-057-2-08
_______CC___AG__
20._GC-05-057-2-08
_______CC___AG__
21._GC-05-057-2-08
_______CC___AG__
22._GC-08-046-1-57
_______CC___AG__
23._GC-08-046-1-57
_______CC___AG__
24._GC-08-046-1-57
_______CC___AG__
25._GC-08-046-1-57
_______CC___AG__
26._GC-08-046-1-57
_______CC___AG__
27._GC-08-046-1-57
_______CC___AG__
28._GC-08-046-1-57
_______CC___AG__
29._GC-05-057-2-08
_______CC___AG__
30._RUQ_1573
_______CC___AG__
31._UF_613
_______AA___AG__
 1516171819202122232425262728
_Input profile
GGACCTACCTACAGCCATACCTTTAACC
1._RUQ_1573
GG____AC_CC_ACCT___
2._UF_613
_____AC_CC_AC____
3._RUQ_1573
_____AC_CC_AC____
4._UF_613
_____AC_CC_AC____
5._UF_613
_____AC_CC_AC____
6._UF_613
_____AC_CC_AC____
7._UF_613
_____AC_CC_AC____
8._UF_613
_____AC_CC_AC____
9._UF_613
_____AC_CC_AC____
10._UF_613
_____AC_CC_AC____
11._UF_613
_____AC_CC_AC____
12._UF_613
_____AC_CC_AC____
13._UF_613
_____AC_CC_AC____
14._UF_613
_____AC_CC_AC____
15._UF_613
_____AC_CC_AC____
16._UF_613
_____AC_CC_AC____
17._GC-08-046-1-57
GG____AC_CC_ACCT___
18._GC-05-057-2-08
GG____AC_CC_ACCT___
19._GC-05-057-2-08
GG____AC_CC_ACCT___
20._GC-05-057-2-08
GG____AC_CC_ACCT___
21._GC-05-057-2-08
GG____AC_CC_ACCT___
22._GC-08-046-1-57
GG____AC_CC_ACCT___
23._GC-08-046-1-57
GG____AC_CC_ACCT___
24._GC-08-046-1-57
GG____AC_CC_ACCT___
25._GC-08-046-1-57
GG____AC_CC_ACCT___
26._GC-08-046-1-57
GG____AC_CC_ACCT___
27._GC-08-046-1-57
GG____AC_CC_ACCT___
28._GC-08-046-1-57
GG____AC_CC_ACCT___
29._GC-05-057-2-08
GG____AC_CC_ACCT___
30._RUQ_1573
_______CC_ACCT___
31._UF_613
_____AC_CG_AC____
 2930313233343536373839404142
_Input profile
AAGGTTTTAGCTTTACAACTGGAGCCAG
1._RUQ_1573
__TTTTAG__AC__GG-_AG
2._UF_613
AA__TT______GG__AG
3._RUQ_1573
AA__TT______GG__AG
4._UF_613
___TT______GG__AG
5._UF_613
___TT______GG__AG
6._UF_613
___TT______GG__AG
7._UF_613
___TT______GG__AG
8._UF_613
___TT______GG__AG
9._UF_613
___TT______GG__AG
10._UF_613
___TT______GG__AG
11._UF_613
___TT______GG__AG
12._UF_613
___TT______GG__AG
13._UF_613
___TT______GG__AG
14._UF_613
___TT______GG__AG
15._UF_613
___TT______GG__AG
16._UF_613
AA__TT______GG__AG
17._GC-08-046-1-57
__CTTTAG__AC_CGGGAG_AG
18._GC-05-057-2-08
__CTTTAG__AC_CGGGAG_AG
19._GC-05-057-2-08
__CTTTAG__AC_CGGGAG_AG
20._GC-05-057-2-08
__CTTTAG__AC_CGGGAG_AG
21._GC-05-057-2-08
__CTTTAG__AC_CGGGAG_AG
22._GC-08-046-1-57
__CTTTAG__AC_CGGGAG_AG
23._GC-08-046-1-57
__CTTTAG__AC_CGGGAG_AG
24._GC-08-046-1-57
__CTTTAG__AC_CGGGAG_AG
25._GC-08-046-1-57
__CTTTAG__AC_CGGGAG_AG
26._GC-08-046-1-57
__CTTTAG__AC_CGGGAG_AG
27._GC-08-046-1-57
__CTTTAG__AC_CGGGAG_AG
28._GC-08-046-1-57
__CTTTAG__AC_CGGGAG_AG
29._GC-05-057-2-08
__CTTTAG__AC_CGGGAG_AG
30._RUQ_1573
__________CC___
31._UF_613
AG__GG______CG__AG
 4344454647484950515253545556
_Input profile
CCCTATCCAGCTCTGTAAGTGGTTAGGG
1._RUQ_1573
CC________GT____
2._UF_613
____AG_CT__GT____
3._RUQ_1573
____AG_CT__GT____
4._UF_613
____AG_CT__GT____
5._UF_613
____AG_CT__GT____
6._UF_613
____AG_CT__GT____
7._UF_613
____AG_CT__GT____
8._UF_613
____AG_CT__GT____
9._UF_613
____AG_CT__GT____
10._UF_613
____AG_CT__GT____
11._UF_613
____AG_CT__GT____
12._UF_613
____AG_CT__GT____
13._UF_613
____AG_CT__GT____
14._UF_613
____AG_CT__GT____
15._UF_613
____AG_CT__GT____
16._UF_613
____AG____GT____
17._GC-08-046-1-57
CC___AG_CT__GT____
18._GC-05-057-2-08
CC___AG_CT__GT____
19._GC-05-057-2-08
CC___AG_CT__GT____
20._GC-05-057-2-08
CC___AG_CT__GT____
21._GC-05-057-2-08
CC___AG_CT__GT____
22._GC-08-046-1-57
CC___AG_CT__GT____
23._GC-08-046-1-57
CC___AG_CT__GT____
24._GC-08-046-1-57
CC___AG_CT__GT____
25._GC-08-046-1-57
CC___AG_CT__GT____
26._GC-08-046-1-57
CC___AG_CT__GT____
27._GC-08-046-1-57
CC___AG_CT__GT____
28._GC-08-046-1-57
CC___AG_CT__GT____
29._GC-05-057-2-08
____AG_CT__GT____
30._RUQ_1573
______________
31._UF_613
____AG_CT__GT____
 575859           
_Input profile
GGCTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1573
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_1573
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._UF_613
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-08-046-1-57
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-05-057-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-05-057-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-05-057-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-05-057-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-08-046-1-57
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-08-046-1-57
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-08-046-1-57
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-08-046-1-57
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-08-046-1-57
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-08-046-1-57
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-08-046-1-57
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-05-057-2-08
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._RUQ_1573
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._UF_613
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: UF_613 RUQ_1573

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._UF_613 RUQ_1573

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._UF_613

identical
13 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

3._UF_613 RUQ_1573

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._UF_613

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

5._UF_613

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

6._UF_613

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

7._UF_613

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

8._UF_613

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

9._UF_613

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

10._UF_613

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

11._UF_613

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

12._UF_613

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

13._UF_613

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

14._UF_613

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

15._UF_613

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._UF_613

identical
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

17._UF_613 GC-08-046-1-57

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

18._UF_613 GC-05-057-2-08

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

19._UF_613 GC-05-057-2-08

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._UF_613 GC-05-057-2-08

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

21._UF_613 GC-05-057-2-08

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

22._UF_613 GC-08-046-1-57

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

23._UF_613 GC-08-046-1-57

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

24._UF_613 GC-08-046-1-57

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._UF_613 GC-08-046-1-57

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._UF_613 GC-08-046-1-57

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

27._UF_613 GC-08-046-1-57

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

28._UF_613 GC-08-046-1-57

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

29._UF_613 GC-05-057-2-08

92.1 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

30._UF_613 RUQ_1573

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

31._UF_613

69.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8157 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1253 53TcSNP1275 54TcSNP1293 55TcSNP1401
56TcSNP1404 57TcSNP1458 58TcSNP1524 59TcSNP1527